Concepts

An Explanation of Chi-Squared Distributions

X2 Tests Part I

X2 Tests Part II

X2 Tests Part III

X2 Tests Part IV

Homogeneity X2
Part I

X2 Contingency Testing

Contingency X2

Homogeneity
X2 - A

Homogeneity X2
Part II

The Calculation
of X2

Homework Assignment #3 Questions

 

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An Explanation of Chi-Squared Distributions

Level Type I Error

The level of Type I error (α) is decided by the scientist. The degrees of freedom is used to determine the critical value of the X2 that determines the rejection region. In our example there are two classes which are B_ and bb. If we know the total number of progeny and the number in one class, then we can subtract to find the number in the second class. This means that 2-1 = df = 1.

phenotype (class) observed number expected number deviation from expected X2
wild type    99 108 -9 0.75
mutant   45  36 +9 2.25
total  144 144 0 3.00

The critical X2 value with 1df and α = 0.05 is 3.84 and the calculated X2 = 3.0. The calculated X2 is smaller than the critical value, so we accept Ho. If the calculated X2 was 5.0, we would reject Ho at the α = 0.05 level because a deviation from expected that is this large would only occur 3 out of 100 times. Because this result would occur only 3/100 when Ho is true, the correctness of the genetic hypothesis would be doubtful.

For a X2 = 3.0, the observed numbers in each class would occur 8 out of 100 trials and this is sufficiently likely to accept Ho.

Degrees of freedom - If the total number of phenotypes is known, then we can determine the number of individuals in one of the two classes. n = 144 and there are two phenotypic classes. If we determine the number of individuals in one variable class, then the number in the other class is fixed.

Copyright 2000©, Ted Helms

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