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Part II
- The average of two, three, and four strand double-crossovers
is fifty percent recombination between two linked loci.
The expected ratio of two, three, and four strand double-crossovers
is a 1:2:1 ratio, respectively.
- When loci are linked, the parental or non-recombinant
classes are the most frequent. The double-crossover classes
are the least frequent type. The locus order is determined
from three-point testcross data. The locus that is recombined
in the least frequent class (double crossover) is the locus
in the middle of the order of the three loci.
- The reciprocal products that result from a crossover occur
with approximately equal frequency. Differences between
the number of reciprocal products is due to the sampling
of gametes that produce the observed genotypes.
- When calculating the recombination fraction between two
loci, the double-crossover types must be included.
- Interference reduces the number of double crossovers because
the formation of one chiasma reduces the chances of a second
chiasma forming close to the first. Interference exists
when a single crossover in one region reduces the probability
of a second single crossover in an adjacent region. If there
was no interference, the probability of a double-crossover
would be the product of the probability of a crossover in
one region times the probability of a crossover in the second
region. A negative interference means that the observed
relative frequency of double crossovers is more than expected.
A positive interference means that the observed relative
frequency of double crossovers is less than expected.
- The coefficient of coincidence is the observed number
of double-crossovers divided by the expected number of double-crossovers.
The interference is one minus the coefficient of coincidence.
- For short chromosome segments, which are less than 10cM,
map distances are additive because the likelihood of double
crossovers is negligible. When the recombination fraction
is greater than 10%, recombination fractions are no longer
additive and must be converted to map distances using a
mapping function.
- 1-2rAC = (1-2rAB)(1-2rBC).
This equation shows that the probability of no recombination
between the flanking markers A and C is equal to the
probability of recombination between markers A and
B times the probability of no recombination between
markers B and C. If recombination fractions were additive
then rAC should equal rAB +
rBC.
Copyright
2000©, Ted Helms |
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