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Kosambi versus Haldane
Mapping Function
C =coefficient of coincidence; I = interference; I
= 1 - C;
C = |
obs. d.c.o. |
expected d.c.o. |
Expected number of double crossovers = rABrBCN.
Example:

Expected number of d.c.o. = 0.148(0.107)740 = 12.
Observed number of d.c.o. = 6.
C = 6/12 = 0.5; I = 1 - 0.5 = 0.5.
Now the expected number of double crossovers would equal
the observed number of double crossovers (except for
sampling) when the probability of a crossover in the
G-S region was independent of the probability of a crossover
in the S-L region. When the probability of a crossover
in the first region is reduced due to the occurrence
of a double crossover in the second region, then we
have interference. The crossover in one region interfered
with a crossover in the second region. If the probability
of a crossover in the G-L region is independent of the
probability of a crossover in the S-L region, then Haldane's
mapping function would fit this biological situation.
However, in this example I = 0.5, so use Kosambi's map
function. Haldane's map function assumes that the probability
of a crossover in one region is independent of the probability
of a crossover in the second region.
Haldane's map function rAC = rAB
+ rBC - 2rABrBC
Kosambi's map function rAC = rAB
+ rBC - 2CrABrBC
When C=1 there is no interference. If you substitute
C = 1 into Kosambi's map function, you can see that
in this case the two map functions are equivalent. In
Kosambi's map function C = 2r. When rAB =
rBC = 0.5, then C = 1. This means that when
the loci are located far apart, interference is absent.
When the loci are close together, interference occurs
and Kosambi's map function would be expected to give
the best results.
Kosambi used C = 2r. When r = 0.5, then C = 2(0.5) =1
and there is no interference. In this case the two mapping
functions are equivalent.
Copyright
2000©, Ted Helms
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